neuron_morphology.feature_extractor._schemas
¶
Module Contents¶
Classes¶
ReferenceLayerDepths |
mm.Schema class with support for making fields default to |
Reconstruction |
mm.Schema class with support for making fields default to |
GlobalParameters |
mm.Schema class with support for making fields default to |
InputParameters |
The base marshmallow schema used by ArgSchemaParser to identify |
OutputParameters |
mm.Schema class with support for making fields default to |
Functions¶
validate_point_depths_path (path: str) |
Check whether a layered point depths path is usable. |
-
neuron_morphology.feature_extractor._schemas.
validate_point_depths_path
(path: str)¶ Check whether a layered point depths path is usable.
-
class
neuron_morphology.feature_extractor._schemas.
ReferenceLayerDepths
(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)¶ Bases:
argschema.schemas.DefaultSchema
mm.Schema class with support for making fields default to values defined by that field’s arguments.
-
key
¶
-
names
¶
-
boundaries
¶
-
classmethod
is_valid
(cls, value)¶
-
-
class
neuron_morphology.feature_extractor._schemas.
Reconstruction
(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)¶ Bases:
argschema.schemas.DefaultSchema
mm.Schema class with support for making fields default to values defined by that field’s arguments.
-
swc_path
¶
-
identifier
¶
-
layered_point_depths_path
¶
-
-
class
neuron_morphology.feature_extractor._schemas.
GlobalParameters
(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)¶ Bases:
argschema.schemas.DefaultSchema
mm.Schema class with support for making fields default to values defined by that field’s arguments.
-
reference_layer_depths
¶
-
-
class
neuron_morphology.feature_extractor._schemas.
InputParameters
(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)¶ Bases:
argschema.schemas.ArgSchema
The base marshmallow schema used by ArgSchemaParser to identify input_json and output_json files and the log_level
-
reconstructions
¶
-
heavy_output_path
¶
-
feature_set
¶
-
only_marks
¶
-
required_marks
¶
-
output_table_path
¶
-
num_processes
¶
-
global_parameters
¶
-
-
class
neuron_morphology.feature_extractor._schemas.
OutputParameters
(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)¶ Bases:
argschema.schemas.DefaultSchema
mm.Schema class with support for making fields default to values defined by that field’s arguments.
-
inputs
¶
-
results
¶
-