neuron_morphology.snap_polygons._schemas
¶
CLI schemas for the inputs to and outputs from snap_polygons.
Module Contents¶
Classes¶
SimpleGeometry |
A named planar geometry |
Image |
A specification for a diagnostic overlay image |
InputParameters |
Top-level schema for inputs to snap_polygons |
OutputImage |
Metadata describing an output diagnoctic overlay image. |
OutputParameters |
Top-level schema for snap_polygons outputs. |
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class
neuron_morphology.snap_polygons._schemas.
SimpleGeometry
(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)¶ Bases:
argschema.schemas.DefaultSchema
A named planar geometry
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name
¶
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path
¶
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class
neuron_morphology.snap_polygons._schemas.
Image
(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)¶ Bases:
argschema.schemas.DefaultSchema
A specification for a diagnostic overlay image
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input_path
¶
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output_path
¶
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downsample
¶
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overlay_types
¶
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class
neuron_morphology.snap_polygons._schemas.
InputParameters
(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)¶ Bases:
argschema.schemas.ArgSchema
Top-level schema for inputs to snap_polygons
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layer_polygons
¶
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pia_surface
¶
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wm_surface
¶
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working_scale
¶
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images
¶
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layer_order
¶
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surface_distance_threshold
¶
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multipolygon_error_threshold
¶
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class
neuron_morphology.snap_polygons._schemas.
OutputImage
(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)¶ Bases:
argschema.schemas.DefaultSchema
Metadata describing an output diagnoctic overlay image.
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input_path
¶
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output_path
¶
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downsample
¶
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overlay_type
¶
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