neuron_morphology.swc_io
¶
Module Contents¶
Functions¶
read_swc (path, columns=SWC_COLUMNS, sep=’ ‘, casts=COLUMN_CASTS) |
Read an swc file into a pandas dataframe |
write_swc (data, path, comments=None, sep=’ ‘, columns=SWC_COLUMNS, casts=COLUMN_CASTS) |
Write an swc file from a pandas dataframe |
apply_casts (df, casts) |
|
morphology_from_swc (swc_path) |
|
morphology_to_swc (morphology, swc_path, comments=None) |
Write an swc file from a morphology object |
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neuron_morphology.swc_io.
SWC_COLUMNS
= ['id', 'type', 'x', 'y', 'z', 'radius', 'parent']¶
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neuron_morphology.swc_io.
COLUMN_CASTS
¶
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neuron_morphology.swc_io.
read_swc
(path, columns=SWC_COLUMNS, sep=' ', casts=COLUMN_CASTS)¶ Read an swc file into a pandas dataframe
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neuron_morphology.swc_io.
write_swc
(data, path, comments=None, sep=' ', columns=SWC_COLUMNS, casts=COLUMN_CASTS)¶ Write an swc file from a pandas dataframe
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neuron_morphology.swc_io.
apply_casts
(df, casts)¶
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neuron_morphology.swc_io.
morphology_from_swc
(swc_path)¶
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neuron_morphology.swc_io.
morphology_to_swc
(morphology, swc_path, comments=None)¶ Write an swc file from a morphology object