neuron_morphology.pipeline._schemas

Module Contents

Classes

PathResolution	mm.Schema class with support for making fields default to
PrimaryBoundaries	mm.Schema class with support for making fields default to
S3LandingBucket	mm.Schema class with support for making fields default to
InputParameters	The base marshmallow schema used by ArgSchemaParser to identify

class neuron_morphology.pipeline._schemas.PathResolution(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)

Bases: argschema.schemas.DefaultSchema

mm.Schema class with support for making fields default to values defined by that field’s arguments.

path

resolution

class neuron_morphology.pipeline._schemas.PrimaryBoundaries(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)

Bases: argschema.schemas.DefaultSchema

mm.Schema class with support for making fields default to values defined by that field’s arguments.

Soma

White_Matter

Pia

class neuron_morphology.pipeline._schemas.S3LandingBucket(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)

Bases: argschema.schemas.DefaultSchema

mm.Schema class with support for making fields default to values defined by that field’s arguments.

name

region

credentials_file

class neuron_morphology.pipeline._schemas.InputParameters(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)

Bases: argschema.schemas.ArgSchema

The base marshmallow schema used by ArgSchemaParser to identify input_json and output_json files and the log_level

destination_bucket

neuron_reconstruction_id

specimen_id

primary_boundaries

swc_file

cell_depth

cut_thickness

marker_file

ccf_soma_xyz

slice_transform

slice_image_flip