neuron_morphology.feature_extractor._schemas

Module Contents

Classes

ReferenceLayerDepths	mm.Schema class with support for making fields default to
Reconstruction	mm.Schema class with support for making fields default to
GlobalParameters	mm.Schema class with support for making fields default to
InputParameters	The base marshmallow schema used by ArgSchemaParser to identify
OutputParameters	mm.Schema class with support for making fields default to

Functions

validate_point_depths_path(path: str)

Check whether a layered point depths path is usable.

neuron_morphology.feature_extractor._schemas.validate_point_depths_path(path: str)

Check whether a layered point depths path is usable.

class neuron_morphology.feature_extractor._schemas.ReferenceLayerDepths(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)

Bases: argschema.schemas.DefaultSchema

mm.Schema class with support for making fields default to values defined by that field’s arguments.

key

names

boundaries

classmethod is_valid(cls, value)

class neuron_morphology.feature_extractor._schemas.Reconstruction(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)

Bases: argschema.schemas.DefaultSchema

mm.Schema class with support for making fields default to values defined by that field’s arguments.

swc_path

identifier

layered_point_depths_path

class neuron_morphology.feature_extractor._schemas.GlobalParameters(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)

Bases: argschema.schemas.DefaultSchema

mm.Schema class with support for making fields default to values defined by that field’s arguments.

reference_layer_depths

class neuron_morphology.feature_extractor._schemas.InputParameters(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)

Bases: argschema.schemas.ArgSchema

The base marshmallow schema used by ArgSchemaParser to identify input_json and output_json files and the log_level

reconstructions

heavy_output_path

feature_set

only_marks

required_marks

output_table_path

num_processes

global_parameters

class neuron_morphology.feature_extractor._schemas.OutputParameters(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)

Bases: argschema.schemas.DefaultSchema

mm.Schema class with support for making fields default to values defined by that field’s arguments.

inputs

results