neuron_morphology.snap_polygons._schemas

CLI schemas for the inputs to and outputs from snap_polygons.

Module Contents

Classes

SimpleGeometry	A named planar geometry
Image	A specification for a diagnostic overlay image
InputParameters	Top-level schema for inputs to snap_polygons
OutputImage	Metadata describing an output diagnoctic overlay image.
OutputParameters	Top-level schema for snap_polygons outputs.

class neuron_morphology.snap_polygons._schemas.SimpleGeometry(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)

Bases: argschema.schemas.DefaultSchema

A named planar geometry

name

path

class neuron_morphology.snap_polygons._schemas.Image(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)

Bases: argschema.schemas.DefaultSchema

A specification for a diagnostic overlay image

input_path

output_path

downsample

overlay_types

class neuron_morphology.snap_polygons._schemas.InputParameters(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)

Bases: argschema.schemas.ArgSchema

Top-level schema for inputs to snap_polygons

layer_polygons

pia_surface

wm_surface

working_scale

images

layer_order

surface_distance_threshold

multipolygon_error_threshold

class neuron_morphology.snap_polygons._schemas.OutputImage(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)

Bases: argschema.schemas.DefaultSchema

Metadata describing an output diagnoctic overlay image.

input_path

output_path

downsample

overlay_type

class neuron_morphology.snap_polygons._schemas.OutputParameters(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)

Bases: argschema.schemas.DefaultSchema

Top-level schema for snap_polygons outputs.

inputs

polygons

surfaces

images