neuron_morphology.features.statistics.overlap module

neuron_morphology.features.statistics.overlap.calculate_coordinate_overlap(coordinates_a, coordinates_b, dimension: int = 1)

Return the % of coordinates_a that are above, overlaping, and below coordinates_b, and the same for b over a

Parameters:

coordinates_a: 2d array-like with x, y, z cols

coordinates_b: 2d array-like with x, y, z cols

dimension: dimension to compare (0, 1, 2 for x, y, z), default 1 (y)

Returns:

dict: a_above_b, a_overlap_b, a_below_b, or

-1’s if coordinates_b is empty

neuron_morphology.features.statistics.overlap.calculate_coordinate_overlap_from_min_max(coordinates: numpy.ndarray, minv: float, maxv: float, dimension: int = 1)

Return the % of coordinates that are above the max, between, or below the min

Parameters:

coordinates: np.ndarray with x, y, z columns

minv: min to check against

maxv: max to check against

dimension: dimension to compare (0, 1, 2 for x, y, z), default 1 (y)