neuron_morphology package

Subpackages

• neuron_morphology.feature_extractor package
  • Submodules
    • neuron_morphology.feature_extractor.data module
    • neuron_morphology.feature_extractor.feature_extraction_run module
    • neuron_morphology.feature_extractor.feature_extractor module
    • neuron_morphology.feature_extractor.feature_specialization module
    • neuron_morphology.feature_extractor.feature_writer module
    • neuron_morphology.feature_extractor.mark module
    • neuron_morphology.feature_extractor.marked_feature module
    • neuron_morphology.feature_extractor.run_feature_extraction module
    • neuron_morphology.feature_extractor.utilities module
  • Module contents
• neuron_morphology.features package
  • Subpackages
    • neuron_morphology.features.branching package
      • Submodules
        • neuron_morphology.features.branching.bifurcations module
      • Module contents
    • neuron_morphology.features.layer package
      • Submodules
        • neuron_morphology.features.layer.layer_histogram module
        • neuron_morphology.features.layer.layered_point_depths module
        • neuron_morphology.features.layer.reference_layer_depths module
      • Module contents
    • neuron_morphology.features.statistics package
      • Submodules
        • neuron_morphology.features.statistics.coordinates module
        • neuron_morphology.features.statistics.moments module
        • neuron_morphology.features.statistics.overlap module
      • Module contents
  • Submodules
    • neuron_morphology.features.default_features module
    • neuron_morphology.features.dimension module
    • neuron_morphology.features.intrinsic module
    • neuron_morphology.features.path module
    • neuron_morphology.features.size module
    • neuron_morphology.features.soma module
  • Module contents
• neuron_morphology.layered_point_depths package
  • Module contents
• neuron_morphology.pipeline package
  • Submodules
    • neuron_morphology.pipeline.post_data_to_s3 module
  • Module contents
• neuron_morphology.snap_polygons package
  • Submodules
    • neuron_morphology.snap_polygons.bounding_box module
    • neuron_morphology.snap_polygons.geometries module
    • neuron_morphology.snap_polygons.image_outputter module
    • neuron_morphology.snap_polygons.postgres_source module
    • neuron_morphology.snap_polygons.types module
  • Module contents
• neuron_morphology.transforms package
  • Subpackages
    • neuron_morphology.transforms.affine_transformer package
      • Submodules
        • neuron_morphology.transforms.affine_transformer.apply_affine_transform module
      • Module contents
    • neuron_morphology.transforms.pia_wm_streamlines package
      • Submodules
        • neuron_morphology.transforms.pia_wm_streamlines.calculate_pia_wm_streamlines module
      • Module contents
    • neuron_morphology.transforms.upright_angle package
      • Submodules
        • neuron_morphology.transforms.upright_angle.compute_angle module
      • Module contents
  • Submodules
    • neuron_morphology.transforms.affine_transform module
    • neuron_morphology.transforms.geometry module
    • neuron_morphology.transforms.streamline module
    • neuron_morphology.transforms.transform_base module
  • Module contents
• neuron_morphology.validation package
  • Submodules
    • neuron_morphology.validation.bits_validation module
    • neuron_morphology.validation.marker_validation module
    • neuron_morphology.validation.morphology_statistics module
    • neuron_morphology.validation.radius_validation module
    • neuron_morphology.validation.report module
    • neuron_morphology.validation.resample_validation module
    • neuron_morphology.validation.result module
    • neuron_morphology.validation.structure_validation module
    • neuron_morphology.validation.type_validation module
    • neuron_morphology.validation.validate_reconstruction module
  • Module contents
• neuron_morphology.vis package
  • Submodules
    • neuron_morphology.vis.morphovis module
  • Module contents

Submodules

• neuron_morphology.constants module
• neuron_morphology.lims_apical_queries module
• neuron_morphology.marker module
• neuron_morphology.morphology module
• neuron_morphology.morphology_builder module
• neuron_morphology.swc_io module

Module contents

Top-level package for neuron_morphology.