neuron_morphology.pipeline._schemas
¶
Module Contents¶
Classes¶
PathResolution |
mm.Schema class with support for making fields default to |
PrimaryBoundaries |
mm.Schema class with support for making fields default to |
S3LandingBucket |
mm.Schema class with support for making fields default to |
InputParameters |
The base marshmallow schema used by ArgSchemaParser to identify |
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class
neuron_morphology.pipeline._schemas.
PathResolution
(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)¶ Bases:
argschema.schemas.DefaultSchema
mm.Schema class with support for making fields default to values defined by that field’s arguments.
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path
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resolution
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class
neuron_morphology.pipeline._schemas.
PrimaryBoundaries
(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)¶ Bases:
argschema.schemas.DefaultSchema
mm.Schema class with support for making fields default to values defined by that field’s arguments.
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Soma
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White_Matter
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Pia
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class
neuron_morphology.pipeline._schemas.
S3LandingBucket
(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)¶ Bases:
argschema.schemas.DefaultSchema
mm.Schema class with support for making fields default to values defined by that field’s arguments.
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name
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region
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credentials_file
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class
neuron_morphology.pipeline._schemas.
InputParameters
(only=None, exclude=(), many=False, context=None, load_only=(), dump_only=(), partial=False, unknown=None)¶ Bases:
argschema.schemas.ArgSchema
The base marshmallow schema used by ArgSchemaParser to identify input_json and output_json files and the log_level
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destination_bucket
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neuron_reconstruction_id
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specimen_id
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primary_boundaries
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swc_file
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cell_depth
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cut_thickness
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marker_file
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ccf_soma_xyz
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slice_transform
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slice_image_flip
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