neuron_morphology

Top-level package for neuron_morphology.

Subpackages

• neuron_morphology.feature_extractor
  • neuron_morphology.feature_extractor.__main__
  • neuron_morphology.feature_extractor._schemas
  • neuron_morphology.feature_extractor.data
  • neuron_morphology.feature_extractor.feature_extraction_run
  • neuron_morphology.feature_extractor.feature_extractor
  • neuron_morphology.feature_extractor.feature_specialization
  • neuron_morphology.feature_extractor.feature_writer
  • neuron_morphology.feature_extractor.mark
  • neuron_morphology.feature_extractor.marked_feature
  • neuron_morphology.feature_extractor.run_feature_extraction
  • neuron_morphology.feature_extractor.utilities
• neuron_morphology.features
  • neuron_morphology.features.branching
    • neuron_morphology.features.branching.bifurcations
  • neuron_morphology.features.layer
    • neuron_morphology.features.layer.layer_histogram
    • neuron_morphology.features.layer.layered_point_depths
    • neuron_morphology.features.layer.reference_layer_depths
  • neuron_morphology.features.statistics
    • neuron_morphology.features.statistics.coordinates
    • neuron_morphology.features.statistics.moments
    • neuron_morphology.features.statistics.moments_along_max_distance_projection
    • neuron_morphology.features.statistics.overlap
  • neuron_morphology.features.default_features
  • neuron_morphology.features.dimension
  • neuron_morphology.features.intrinsic
  • neuron_morphology.features.path
  • neuron_morphology.features.size
  • neuron_morphology.features.soma
• neuron_morphology.layered_point_depths
  • neuron_morphology.layered_point_depths.__main__
  • neuron_morphology.layered_point_depths._schemas
• neuron_morphology.pipeline
  • neuron_morphology.pipeline._schemas
  • neuron_morphology.pipeline.post_data_to_s3
• neuron_morphology.snap_polygons
  • neuron_morphology.snap_polygons.__main__
  • neuron_morphology.snap_polygons._from_lims
  • neuron_morphology.snap_polygons._schemas
  • neuron_morphology.snap_polygons.bounding_box
  • neuron_morphology.snap_polygons.cortex_surfaces
  • neuron_morphology.snap_polygons.geometries
  • neuron_morphology.snap_polygons.image_outputter
  • neuron_morphology.snap_polygons.types
• neuron_morphology.transforms
  • neuron_morphology.transforms.affine_transformer
    • neuron_morphology.transforms.affine_transformer._schemas
    • neuron_morphology.transforms.affine_transformer.apply_affine_transform
  • neuron_morphology.transforms.pia_wm_streamlines
    • neuron_morphology.transforms.pia_wm_streamlines._schemas
    • neuron_morphology.transforms.pia_wm_streamlines.calculate_pia_wm_streamlines
  • neuron_morphology.transforms.scale_correction
    • neuron_morphology.transforms.scale_correction._schemas
    • neuron_morphology.transforms.scale_correction.compute_scale_correction
  • neuron_morphology.transforms.tilt_correction
    • neuron_morphology.transforms.tilt_correction._schemas
    • neuron_morphology.transforms.tilt_correction.compute_tilt_correction
  • neuron_morphology.transforms.upright_angle
    • neuron_morphology.transforms.upright_angle._schemas
    • neuron_morphology.transforms.upright_angle.compute_angle
  • neuron_morphology.transforms.affine_transform
  • neuron_morphology.transforms.geometry
  • neuron_morphology.transforms.streamline
  • neuron_morphology.transforms.transform_base
• neuron_morphology.validation
  • neuron_morphology.validation.bits_validation
  • neuron_morphology.validation.marker_validation
  • neuron_morphology.validation.morphology_statistics
  • neuron_morphology.validation.radius_validation
  • neuron_morphology.validation.report
  • neuron_morphology.validation.resample_validation
  • neuron_morphology.validation.result
  • neuron_morphology.validation.structure_validation
  • neuron_morphology.validation.type_validation
  • neuron_morphology.validation.validate_reconstruction
• neuron_morphology.vis
  • neuron_morphology.vis.morphovis

Submodules

• neuron_morphology.constants
• neuron_morphology.lims_apical_queries
• neuron_morphology.marker
• neuron_morphology.morphology
• neuron_morphology.morphology_builder
• neuron_morphology.swc_io

Package Contents

neuron_morphology.version_path

neuron_morphology.__version__